- Free Dna Software
- Dna Sequence Assembly Student Worksheet
- Free Dna Sequence Assembly Software Mac Pro
- Dna Sequence Alignment Software
I want to find a software to browse and edit the DNA sequence (ABI format). Is there any software better than Bioedit or Mega which contains more information? Download chromas sequence viewer for free. Education software downloads - Chromas by Technelysium Pty Ltd and many more programs are available for instant and free download. Geospiza’s FinchTV is the popular way to view DNA sequence traces on Linux, Mac OSX, Windows, and Solaris. DNA Baser Sequence Assembler is easy to use software.
This is a list of computer software which is made for bioinformatics and released under open-source software licenses with articles in Wikipedia.
Free Dna Software
| Software | Description | Platform | License | Developer |
|---|---|---|---|---|
| .NET Bio | Language-neutral toolkit built using the Microsoft 4.0 .NET Framework to help developers, researchers, and scientists | .NET Framework | Apache | Collaborative project |
| AMPHORA | Metagenomics analysis software | Linux | GPL | ? |
| Anduril | Component-based workflow framework for data analysis | Linux, macOS, Windows | GPL | University of Helsinki |
| Ascalaph Designer | Computer program for general purpose molecular modelling for molecular design and simulations. | ? | GPLv2 | Agile Molecule |
| AutoDock | Suite of automated docking tools | ? | GPL | ? |
| Avogadro | Molecule editor and visualizer for in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas. | ? | GPL | ? |
| Bioclipse | Visual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP) | ? | Eclipse Public | The Bioclipse Project |
| Bioconductor | R (programming language) language toolkit | Linux, macOS, Windows | Artistic 2.0 | Fred Hutchinson Cancer Research Center |
| BioJava | Java | Linux, macOS, Windows | LGPL v2.1 | Open Bioinformatics Foundation |
| BioJS | JavaScript | Web browser | Apache | ? |
| BioMOBY | Registry of web services | Web browser | Artistic | Open Bioinformatics Foundation |
| BioPerl | Perl language toolkit | Cross-platform | Artistic, GPL | Open Bioinformatics Foundation |
| BioPHP | PHP language toolkit | ? | GPL v2 | Open Bioinformatics Foundation |
| Biopython | Python language toolkit | Cross-platform | Biopython[1] | Open Bioinformatics Foundation |
| BioRuby | Ruby language toolkit | ? | GPL v2 or Ruby | Open Bioinformatics Foundation |
| CP2K | Perform atomistic simulations of solid state, liquid, molecular and biological systems. | ? | GPL and LGPL | Free open source GNU GPLv2 or later |
| EMBOSS | Suite of packages for sequencing, searching, etc. | ? | GPL and LGPL | Collaborative project |
| Galaxy | Scientific workflow and data integration system | Unix-like | Academic Free | Collaborative project |
| GenePattern | Scientific workflow system that provides access to hundreds of genomic analysis tools | Unix-like (public server); Linux, macOS, Windows | MIT | Broad Institute, UC San Diego |
| Geworkbench | Genomic data integration platform | Linux, macOS, Windows | GeWorkbench License[2] | Columbia University |
| GMOD | Toolkit to address many common challenges at biological databases | Unix-like (server), Web browser (client) | Varies depending on tool | Collaborative project |
| GenGIS | Application that allows combining digital map data with information about biological sequences collected from the environment | Windows, macOS | GPL | Collaborative project |
| Genomespace | Centralized web application that provides data format transformations and facilitates connections with other bioinformatics tools | Web browser | LGPL | Broad Institute, collaborative project |
| GENtle | An equivalent to the proprietary Vector NTI, a tool to analyze and edit DNA sequence files | ? | GPL | Magnus Manske |
| GROMACS | Molecular dynamics package mainly designed for simulations of proteins, lipids and nucleic acids. | Linux, macOS, Windows | Common Public 1.0 | GenoViz |
| Integrated Genome Browser | Java-based desktop genome browser | Linux, macOS, Windows | Common Public 1.0 | GenoViz |
| InterMine | Extensive data warehouse system for the analysis and integration of biological datasets | Cross-platform | LGPL | University of Cambridge |
| LabKey Server | Software platform, allows organizations to integrate, analyze, and share complex biomedical data | Linux, macOS, Windows | Apache | LabKey Software Foundation |
| LAMMPS | Molecular dynamics program | Linux, macOS, Windows | Apache | Sandia National Laboratories. |
| mothur | Software for analysis of the 16S rRNA gene | Linux, macOS, Windows | ? | University of Michigan |
| PathVisio | Desktop software for drawing, analysing, and visualizing biological pathways | Linux, macOS, Windows | Apache 2.0 | Maastricht University |
| Orange | Component-based data mining and machine learning software suite, featuring a visual programming front-end for exploratory data analysis and interactive visualization, and Python bindings and libraries for scripting | Linux, macOS, Windows | GPL | University of Ljubljana |
| Staden Package | Sequence assembly, editing, and analysis, mainly consisting of gap4, gap5, and spin. | Linux, macOS, Windows | BSD | Wellcome Trust Sanger Institute, Medical Research Council |
| Taverna workbench | Tool to design and execute workflows | Linux, macOS, Windows | LGPL | myGrid |
| UGENE | Integrated bioinformatics tools | Linux, macOS, Windows | GPL 2 | Unipro |
| Unipept | Metaproteomics biodiversity analysis | Web browser | MIT | Ghent University |
| VOTCA | A Coarse-grained modeling package, | GNU/Linux, macOS, Windows, any other Unix variety | Apache License 2.0 | Max Planck Institute for Polymer Research |
See also[edit]
References[edit]
- ^Biopython License
- ^'GeWorkbench License'. geWorkbench. Columbia University. 15 June 2014.
External links[edit]
Dna Sequence Assembly Student Worksheet
- Free Biology Software – Free Software Directory – Free Software Foundation
Shebuy.in
The DNASequence Read Toolkit is a set of programs to convert data from DNA sequencing instruments into formats suitable for archiving, viewing or for onward processing (for example alignment or. ...
- sequenceread-2.1.4.tar.gz
- sequenceread
- Freeware (Free)
- 171 Kb
- BSD; Linux
Portable Nucleotide SequenceAssembly Manager (PAM) is a new Python program that provides a simple, user-friendly interface for the management of data files from preprocessing of raw sequence files to an assembly process.
- Portable Sequence AssemblyManager
- alf
- Freeware (Free)
- Windows
Visit us for updated info: DNA Baser Assembler is easy to use software for simple and batch DNAsequenceassembly, DNAsequence analysis, contig editing, metadata integration and mutation detection.
- DNA Baser Setup.exe
- Heracle BioSoft SRL
- Freeware (Free)
- 1.3 Mb
- Win95, Win98, WinME, WinNT 3.x, WinNT 4.x, Win2000, WinXP, Win2003, Win Vista, Win Vista x64, Linux, Mac OS X, Mac OS X 10.1, Mac OS X 10.2, Mac OS X 10.3, Mac OS X 10.4, Mac OS X 10.5, Mac Other
This tool will show the proportions between nucleotides in a DNA sequence.You don't need to install it or unpack it. Just download the program and double click to run it.
- Biology-tools-package.exe
- Heracle BioSoft
- Freeware (Free)
- 215 Kb
- Win95, Win98, WinME, WinNT 3.x, WinNT 4.x, Win2000, WinXP, Win2003, Linux, Mac OS X
A fully developed set of DNAsequenceassembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows..
- staden-2.0.0b9-src.tar.gz
- staden
- Freeware (Free)
- 4.23 Mb
- Windows; BSD; Mac; Linux
ABySS-Explorer is an interactive Java application that employs a novel graph-based representation to display a sequenceassembly and associated meta data. The tool was designed with the ABySS sequence assembler in mind and was motivated by the need. ...
- launch.jnlp
- BC Genome Sciences Centre
- Freeware (Free)
- Windows All
Easy to use aligner software for DNAsequence contig assembly, contig editing, and mutation detection for Windows. It is a molecular biology software that can view and assemble sequences in contigs.Features: end clip, export, assemblies, detection. ...
- DNA BASER - affordablecontig assembly
- CubicDesign
- Shareware ($490.00)
- 1.11 Mb
- Windows
This 30 days fully functional demo of CLC DNA Workbench provides a wide range of advanced DNAsequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench.Some analyses are:- Assembly of DNA. ...
- CLCDNAWorkbench.dmg
- CLC bio
- Freeware (Free)
- 52.6 Mb
- Mac OS X 10.4 or later
CLC DNA Workbench 5.6.1 provides users with a useful software environment enabling users to make a large number of advanced DNAsequence analyses, combined with smooth data management, and excellent graphical viewing and output options.Major. ...
- CLC DNA Workbench
- CLC bio A/S
- Trial ($990.00)
- Windows Vista, Windows XP, Windows 2000
BushMan is a web interface and a quality assurance tool for biological sequenceassembly.It is a small application that helps process chromatograms, and it assembles using Phred and Phrap. It produces a FASTA formatted consensus. ...
- bushman-beta_2.0.tar.gz
- bushman
- Freeware (Free)
- 5.33 Mb
- Linux
DNA Replicator is a graphical tool (written in java) that compute the complementary sequence from an input DNAsequence. It's a really easy used. ...
- DNA Replicator
- dnarep
- Freeware (Free)
- 10 Kb
- Windows; Mac; Linux
SRF (Sequence Read Format) is used to store DNAsequence SRF (Sequence Read Format) is used to store DNA sequence data..
- srf-v0.1.tar.gz
- srf
- Freeware (Free)
- 840 Kb
- BSD; Linux
Related:Dna Sequence Assembly - Genome Sequence Assembly - Sequence Assembly Program - Dna Sequence - Dna Sequence Search
Free Dna Sequence Assembly Software Mac Pro
