Free Dna Sequence Assembly Software Mac

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I want to find a software to browse and edit the DNA sequence (ABI format). Is there any software better than Bioedit or Mega which contains more information? Download chromas sequence viewer for free. Education software downloads - Chromas by Technelysium Pty Ltd and many more programs are available for instant and free download. Geospiza’s FinchTV is the popular way to view DNA sequence traces on Linux, Mac OSX, Windows, and Solaris. DNA Baser Sequence Assembler is easy to use software.

This is a list of computer software which is made for bioinformatics and released under open-source software licenses with articles in Wikipedia.

Free Dna Software

SoftwareDescriptionPlatformLicenseDeveloper
.NET BioLanguage-neutral toolkit built using the Microsoft 4.0 .NET Framework to help developers, researchers, and scientists.NET FrameworkApacheCollaborative project
AMPHORAMetagenomics analysis softwareLinuxGPL?
AndurilComponent-based workflow framework for data analysisLinux, macOS, WindowsGPLUniversity of Helsinki
Ascalaph DesignerComputer program for general purpose molecular modelling for molecular design and simulations.?GPLv2Agile Molecule
AutoDockSuite of automated docking tools?GPL?
AvogadroMolecule editor and visualizer for in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.?GPL?
BioclipseVisual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP)?Eclipse PublicThe Bioclipse Project
BioconductorR (programming language) language toolkitLinux, macOS, WindowsArtistic 2.0Fred Hutchinson Cancer Research Center
BioJavaJavaLinux, macOS, WindowsLGPL v2.1Open Bioinformatics Foundation
BioJSJavaScriptWeb browserApache?
BioMOBYRegistry of web servicesWeb browserArtisticOpen Bioinformatics Foundation
BioPerlPerl language toolkitCross-platformArtistic, GPLOpen Bioinformatics Foundation
BioPHPPHP language toolkit?GPL v2Open Bioinformatics Foundation
BiopythonPython language toolkitCross-platformBiopython[1]Open Bioinformatics Foundation
BioRubyRuby language toolkit?GPL v2 or RubyOpen Bioinformatics Foundation
CP2KPerform atomistic simulations of solid state, liquid, molecular and biological systems.?GPL and LGPLFree open source GNU GPLv2 or later
EMBOSSSuite of packages for sequencing, searching, etc.?GPL and LGPLCollaborative project
GalaxyScientific workflow and data integration systemUnix-likeAcademic FreeCollaborative project
GenePatternScientific workflow system that provides access to hundreds of genomic analysis toolsUnix-like (public server); Linux, macOS, WindowsMITBroad Institute, UC San Diego
GeworkbenchGenomic data integration platformLinux, macOS, WindowsGeWorkbench License[2]Columbia University
GMODToolkit to address many common challenges at biological databasesUnix-like (server), Web browser (client)Varies depending on toolCollaborative project
GenGISApplication that allows combining digital map data with information about biological sequences collected from the environmentWindows, macOSGPLCollaborative project
GenomespaceCentralized web application that provides data format transformations and facilitates connections with other bioinformatics toolsWeb browserLGPLBroad Institute, collaborative project
GENtleAn equivalent to the proprietary Vector NTI, a tool to analyze and edit DNA sequence files?GPLMagnus Manske
GROMACSMolecular dynamics package mainly designed for simulations of proteins, lipids and nucleic acids.Linux, macOS, WindowsCommon Public 1.0GenoViz
Integrated Genome BrowserJava-based desktop genome browserLinux, macOS, WindowsCommon Public 1.0GenoViz
InterMineExtensive data warehouse system for the analysis and integration of biological datasetsCross-platformLGPLUniversity of Cambridge
LabKey ServerSoftware platform, allows organizations to integrate, analyze, and share complex biomedical dataLinux, macOS, WindowsApacheLabKey Software Foundation
LAMMPSMolecular dynamics programLinux, macOS, WindowsApacheSandia National Laboratories.
mothurSoftware for analysis of the 16S rRNA geneLinux, macOS, Windows?University of Michigan
PathVisioDesktop software for drawing, analysing, and visualizing biological pathwaysLinux, macOS, WindowsApache 2.0Maastricht University
OrangeComponent-based data mining and machine learning software suite, featuring a visual programming front-end for exploratory data analysis and interactive visualization, and Python bindings and libraries for scriptingLinux, macOS, WindowsGPLUniversity of Ljubljana
Staden PackageSequence assembly, editing, and analysis, mainly consisting of gap4, gap5, and spin.Linux, macOS, WindowsBSDWellcome Trust Sanger Institute, Medical Research Council
Taverna workbenchTool to design and execute workflowsLinux, macOS, WindowsLGPLmyGrid
UGENEIntegrated bioinformatics toolsLinux, macOS, WindowsGPL 2Unipro
UnipeptMetaproteomics biodiversity analysisWeb browserMITGhent University
VOTCAA Coarse-grained modeling package,GNU/Linux, macOS, Windows, any other Unix varietyApache License 2.0Max Planck Institute for Polymer Research

See also[edit]

References[edit]

  1. ^Biopython License
  2. ^'GeWorkbench License'. geWorkbench. Columbia University. 15 June 2014.

External links[edit]

Dna Sequence Assembly Student Worksheet

  • Free Biology Software – Free Software Directory – Free Software Foundation

Shebuy.in

Retrieved from 'https://en.wikipedia.org/w/index.php?title=List_of_open-source_bioinformatics_software&oldid=958603375'
  • The DNASequence Read Toolkit is a set of programs to convert data from DNA sequencing instruments into formats suitable for archiving, viewing or for onward processing (for example alignment or. ...

    • sequenceread-2.1.4.tar.gz
    • sequenceread
    • Freeware (Free)
    • 171 Kb
    • BSD; Linux
  • Portable Nucleotide SequenceAssembly Manager (PAM) is a new Python program that provides a simple, user-friendly interface for the management of data files from preprocessing of raw sequence files to an assembly process.

    • Portable Sequence AssemblyManager
    • alf
    • Freeware (Free)
    • Windows
  • Visit us for updated info: DNA Baser Assembler is easy to use software for simple and batch DNAsequenceassembly, DNAsequence analysis, contig editing, metadata integration and mutation detection.

    • DNA Baser Setup.exe
    • Heracle BioSoft SRL
    • Freeware (Free)
    • 1.3 Mb
    • Win95, Win98, WinME, WinNT 3.x, WinNT 4.x, Win2000, WinXP, Win2003, Win Vista, Win Vista x64, Linux, Mac OS X, Mac OS X 10.1, Mac OS X 10.2, Mac OS X 10.3, Mac OS X 10.4, Mac OS X 10.5, Mac Other
  • This tool will show the proportions between nucleotides in a DNA sequence.You don't need to install it or unpack it. Just download the program and double click to run it.

    • Biology-tools-package.exe
    • Heracle BioSoft
    • Freeware (Free)
    • 215 Kb
    • Win95, Win98, WinME, WinNT 3.x, WinNT 4.x, Win2000, WinXP, Win2003, Linux, Mac OS X
  • A fully developed set of DNAsequenceassembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS A fully developed set of DNA sequence assembly (Gap4 and Gap5), editing and analysis tools (Spin) for Unix, Linux, MacOSX and MS Windows..

    • staden-2.0.0b9-src.tar.gz
    • staden
    • Freeware (Free)
    • 4.23 Mb
    • Windows; BSD; Mac; Linux
  • ABySS-Explorer is an interactive Java application that employs a novel graph-based representation to display a sequenceassembly and associated meta data. The tool was designed with the ABySS sequence assembler in mind and was motivated by the need. ...

    • launch.jnlp
    • BC Genome Sciences Centre
    • Freeware (Free)
    • Windows All
  • Easy to use aligner software for DNAsequence contig assembly, contig editing, and mutation detection for Windows. It is a molecular biology software that can view and assemble sequences in contigs.Features: end clip, export, assemblies, detection. ...

    • DNA BASER - affordablecontig assembly
    • CubicDesign
    • Shareware ($490.00)
    • 1.11 Mb
    • Windows
  • This 30 days fully functional demo of CLC DNA Workbench provides a wide range of advanced DNAsequence analyses, and is based on the same user-friendly and integrated software environment as CLC Free Workbench.Some analyses are:- Assembly of DNA. ...

    • CLCDNAWorkbench.dmg
    • CLC bio
    • Freeware (Free)
    • 52.6 Mb
    • Mac OS X 10.4 or later
  • CLC DNA Workbench 5.6.1 provides users with a useful software environment enabling users to make a large number of advanced DNAsequence analyses, combined with smooth data management, and excellent graphical viewing and output options.Major. ...

    • CLC DNA Workbench
    • CLC bio A/S
    • Trial ($990.00)
    • Windows Vista, Windows XP, Windows 2000
  • BushMan is a web interface and a quality assurance tool for biological sequenceassembly.It is a small application that helps process chromatograms, and it assembles using Phred and Phrap. It produces a FASTA formatted consensus. ...

    • bushman-beta_2.0.tar.gz
    • bushman
    • Freeware (Free)
    • 5.33 Mb
    • Linux
  • DNA Replicator is a graphical tool (written in java) that compute the complementary sequence from an input DNAsequence. It's a really easy used. ...

    • DNA Replicator
    • dnarep
    • Freeware (Free)
    • 10 Kb
    • Windows; Mac; Linux
  • SRF (Sequence Read Format) is used to store DNAsequence SRF (Sequence Read Format) is used to store DNA sequence data..

    • srf-v0.1.tar.gz
    • srf
    • Freeware (Free)
    • 840 Kb
    • BSD; Linux

Related:Dna Sequence Assembly - Genome Sequence Assembly - Sequence Assembly Program - Dna Sequence - Dna Sequence Search

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