Dna Sequence Analysis Software Free Mac

  1. Free Dna Analysis Tools

This is a list of computer software which is made for bioinformatics and released under open-source software licenses with articles in Wikipedia.

Free Will Gilbert Mac/OS X 10.8. I've replaced the commercial sequence analysis software provided in the lab with SA because it just makes everything faster. (even commercial ones like DNA. Sequence Scanner Software v1.0, a free software enables you to view, edit, print and export sequence data generated using the Applied Biosystems Genetic Analyzers Staden Package, a free genomic analysis package Edit View, a DNA sequence assembly and analysis program for Mac OS.

SoftwareDescriptionPlatformLicenseDeveloper
.NET BioLanguage-neutral toolkit built using the Microsoft 4.0 .NET Framework to help developers, researchers, and scientists.NET FrameworkApacheCollaborative project
AMPHORAMetagenomics analysis softwareLinuxGPL?
AndurilComponent-based workflow framework for data analysisLinux, macOS, WindowsGPLUniversity of Helsinki
Ascalaph DesignerComputer program for general purpose molecular modelling for molecular design and simulations.?GPLv2Agile Molecule
AutoDockSuite of automated docking tools?GPL?
AvogadroMolecule editor and visualizer for in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.?GPL?
BioclipseVisual platform for chemo- and bioinformatics based on the Eclipse Rich Client Platform (RCP)?Eclipse PublicThe Bioclipse Project
BioconductorR (programming language) language toolkitLinux, macOS, WindowsArtistic 2.0Fred Hutchinson Cancer Research Center
BioJavaJavaLinux, macOS, WindowsLGPL v2.1Open Bioinformatics Foundation
BioJSJavaScriptWeb browserApache?
BioMOBYRegistry of web servicesWeb browserArtisticOpen Bioinformatics Foundation
BioPerlPerl language toolkitCross-platformArtistic, GPLOpen Bioinformatics Foundation
BioPHPPHP language toolkit?GPL v2Open Bioinformatics Foundation
BiopythonPython language toolkitCross-platformBiopython[1]Open Bioinformatics Foundation
BioRubyRuby language toolkit?GPL v2 or RubyOpen Bioinformatics Foundation
CP2KPerform atomistic simulations of solid state, liquid, molecular and biological systems.?GPL and LGPLFree open source GNU GPLv2 or later
EMBOSSSuite of packages for sequencing, searching, etc.?GPL and LGPLCollaborative project
GalaxyScientific workflow and data integration systemUnix-likeAcademic FreeCollaborative project
GenePatternScientific workflow system that provides access to hundreds of genomic analysis toolsUnix-like (public server); Linux, macOS, WindowsMITBroad Institute, UC San Diego
GeworkbenchGenomic data integration platformLinux, macOS, WindowsGeWorkbench License[2]Columbia University
GMODToolkit to address many common challenges at biological databasesUnix-like (server), Web browser (client)Varies depending on toolCollaborative project
GenGISApplication that allows combining digital map data with information about biological sequences collected from the environmentWindows, macOSGPLCollaborative project
GenomespaceCentralized web application that provides data format transformations and facilitates connections with other bioinformatics toolsWeb browserLGPLBroad Institute, collaborative project
GENtleAn equivalent to the proprietary Vector NTI, a tool to analyze and edit DNA sequence files?GPLMagnus Manske
GROMACSMolecular dynamics package mainly designed for simulations of proteins, lipids and nucleic acids.Linux, macOS, WindowsCommon Public 1.0GenoViz
Integrated Genome BrowserJava-based desktop genome browserLinux, macOS, WindowsCommon Public 1.0GenoViz
InterMineExtensive data warehouse system for the analysis and integration of biological datasetsCross-platformLGPLUniversity of Cambridge
LabKey ServerSoftware platform, allows organizations to integrate, analyze, and share complex biomedical dataLinux, macOS, WindowsApacheLabKey Software Foundation
LAMMPSMolecular dynamics programLinux, macOS, WindowsApacheSandia National Laboratories.
mothurSoftware for analysis of the 16S rRNA geneLinux, macOS, Windows?University of Michigan
PathVisioDesktop software for drawing, analysing, and visualizing biological pathwaysLinux, macOS, WindowsApache 2.0Maastricht University
OrangeComponent-based data mining and machine learning software suite, featuring a visual programming front-end for exploratory data analysis and interactive visualization, and Python bindings and libraries for scriptingLinux, macOS, WindowsGPLUniversity of Ljubljana
Staden PackageSequence assembly, editing, and analysis, mainly consisting of gap4, gap5, and spin.Linux, macOS, WindowsBSDWellcome Trust Sanger Institute, Medical Research Council
Taverna workbenchTool to design and execute workflowsLinux, macOS, WindowsLGPLmyGrid
UGENEIntegrated bioinformatics toolsLinux, macOS, WindowsGPL 2Unipro
UnipeptMetaproteomics biodiversity analysisWeb browserMITGhent University
VOTCAA Coarse-grained modeling package,GNU/Linux, macOS, Windows, any other Unix varietyApache License 2.0Max Planck Institute for Polymer Research

See also[edit]

References[edit]

  1. ^Biopython License
  2. ^'GeWorkbench License'. geWorkbench. Columbia University. 15 June 2014.

External links[edit]

  • Free Biology Software – Free Software Directory – Free Software Foundation

Shebuy.in

Retrieved from 'https://en.wikipedia.org/w/index.php?title=List_of_open-source_bioinformatics_software&oldid=958603375'

  • PARs is a bioinformatics tool for the analysis of cis-regulatory DNA sequences. Composed of two parts: a suite of sequenceanalysis algorithms for predicting cis-binding sites in DNA sequences and a GUI for visualisation and exploration of the results.

    • PARS - Regulatory sequenceanalysis tool
    • Mark Robinson
    • Freeware (Free)
    • Windows

  • The DNASequence Read Toolkit is a set of programs to convert data from DNA sequencing instruments into formats suitable for archiving, viewing or for onward processing (for example alignment or. ...

    • sequenceread-2.1.4.tar.gz
    • sequenceread
    • Freeware (Free)
    • 171 Kb
    • BSD; Linux

  • POSA (Perl Objects for SequenceAnalysis) provides an easy-to-use perl interface to handling raw ABI sequence trace files. For example: fasta can be extracted, sequence contigs can be build and putative SNPs and SBE primers can be easily. ...

    • POSA-0.8.tar.gz
    • posa
    • Freeware (Free)
    • 3.65 Mb
    • Windows; Mac; Linux

  • Automated Database-lookup and SequenceAnalysis Tool for use specifically with BioPython. Used for obtaining Sequence and other Data from online databases and processing the data using open bioinformatics tools like BLAST and MEME.

    • Adsat -- Sequence AnalysisTool
    • jason
    • Freeware (Free)
    • Windows

  • Visit us for updated info: DNA Baser Assembler is easy to use software for simple and batch DNAsequence assembly, DNAsequenceanalysis, contig editing, metadata integration and mutation detection.

    • DNA Baser Setup.exe
    • Heracle BioSoft SRL
    • Freeware (Free)
    • 1.3 Mb
    • Win95, Win98, WinME, WinNT 3.x, WinNT 4.x, Win2000, WinXP, Win2003, Win Vista, Win Vista x64, Linux, Mac OS X, Mac OS X 10.1, Mac OS X 10.2, Mac OS X 10.3, Mac OS X 10.4, Mac OS X 10.5, Mac Other

  • NoeClone, your virtual cloning laboratory. NoeClone provides a knowledge-enhanced and comprehensive solution for virtual cloning, gel simulation, plasmid map drawing and sequenceanalysis. NoeClone transforms the complex molecular cloning process. ...

    • NoeCloneDemo_windows_3_0.exe
    • NoeGen
    • Demo ($29.00)
    • 57.84 Mb
    • WinXP, WinVista, WinVista x64, Win7 x32, Win7 x64, Win2000, Mac OS X, Win98, Unix, Linux, Linux Console, Linux Gnome, Linux GPL, Linux Open Source, MS-DOS

  • NoeClone, your virtual cloning laboratory. NoeClone provides a knowledge-enhanced and comprehensive solution for virtual cloning, gel simulation, plasmid map drawing and sequenceanalysis. NoeClone transforms the complex molecular cloning process. ...

    • NoeClone Advanced Edition
    • NoeGen
    • Demo ($399.00)
    • 58.19 Mb
    • WinXP, WinVista, WinVista x64, Win7 x32, Win7 x64, Win2000, Mac OS X, Mac Other, Win98, Unix, Linux, Linux Console, Linux Gnome, Linux GPL, Linux Open Source, MS-DOS

  • Suite of tools for DNAsequenceanalysis - searching (EST, mRNA, sequencer reads); aligning (ESTs, mRNA, whole genome); and analysis (repeats,. ...

    • sim4db-r1896.tar.bz2
    • kmer
    • Freeware (Free)
    • 476 Kb
    • BSD; Linux

  • This tool will show the proportions between nucleotides in a DNA sequence.You don't need to install it or unpack it. Just download the program and double click to run it.

    • Biology-tools-package.exe
    • Heracle BioSoft
    • Freeware (Free)
    • 215 Kb
    • Win95, Win98, WinME, WinNT 3.x, WinNT 4.x, Win2000, WinXP, Win2003, Linux, Mac OS X

  • Jnomics was specially designed as a cloud-scale sequenceanalysis suite. The project was built in order to help meet the computational challenges presented by the continuing revolution in massively parallel DNA sequencing technologies. In total,. ...

    • jnomics-0.1.1-b12.tar.gz
    • ClockworkSoul, MichaelSchatz, James
    • Freeware (Free)
    • Windows All

  • iMethy is a handy, easy to use genome-wide DNA methylation analysis and visualization application based on next generation sequencing. Firstly, it holds the command-line pipeline to align the bisulfite-treated short read, identify the. ...

    • iMethy_1.0.2_i386_win32.zip
    • hou huabin
    • Freeware (Free)
    • WindowsAll

  • Oligomer is a small, simple, Java based application specially designed to help you perform sequenceanalysis with standard and mixed bases. This tool will also help you find out the physical properties of the sequence, so that you get a complete. ...

    • oligomer.jnlp
    • Ruslan Kalendar
    • Freeware (Free)
    • WindowsAll

Dna sequence analysis software free mac freeRelated:Dna Sequence Analysis Software Free MacDna Sequence Analysis - Dna Analysis Sequence Free - Dna Sequence - Dna Sequence Viewer - Dna Sequence Assembly

Free Dna Analysis Tools

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